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Python Visualization and Data Exploration

NumbaPro

NumbaPro is an enhanced version of Numba which adds premium features and functionality that allow developers to rapidly create optimized code that integrates well with NumPy.

With NumbaPro, Python developers can define NumPy ufuncs and generalized ufuncs in Python, which are compiled to machine code dynamically and loaded on the fly. Additionally, NumbaPro offers developers the ability to target multicore and GPU architectures with Python code for both ufuncs and general-purpose code.

Finally, with NumbaPro, high-level array-expressions (slicing, vectorized math, reductions, linear-algebra operations, etc.) can be compiled directy to machine code providing the fastest code using all the information available about the calculation

For targeting the GPU, NumbaPro can either do the work automatically, doing its best to optimize the code for the GPU architecture. Alternatively, CUDA-based API is provided for writing CUDA code specifically in Python for ultimate control of the hardware (with thread and block identities).

Getting Started

Let’s start with a simple function to add together all the pairwise values in two NumPy arrays. Asking NumbaPro to compile this python function to vectorized machine code for execution on the CPU is as simple as adding a single line of code (invoked via a decorator on the function):

from numbapro import vectorize, float32

@vectorize([float32(float32, float32)], target='cpu')
def sum(a, b):
    return a + b

# Invoke like:  result_array = sum(big_input_1, big_input_2)

Similarly, one can instead target the GPU for execution of the same python function by modifying a single line in the above example:

@vectorize([float32(float32, float32)], target='gpu')

Targeting the GPU for execution introduces the potential for numerous GPU-specific optimizations so as a starting point for more complex scenarios, one can also target the GPU with NumbaPro via its Just-In-Time (JIT) compiler:

from numbapro import cuda, float32

@cuda.jit(argtypes=[float32[:], float32[:], float32[:]])
def sum(a, b, result):
    i = cuda.grid(1)
    result[i] = a[i] + b[i]

# Invoke like:  sum[grid_dim, block_dim](big_input_1, big_input_2, result_array)

NumbaPro also supports a higher-level approach for targeting the GPU via the still rapidly evolving ComputeUnit (CU) abstraction. Working with CU involves concepts from stream computing interfaces for working with CUDA-capable GPUs. As a starting example:

from numbapro import CU
import numpy as np

def sum(tid, a, b, result):
    result[tid] = a[tid] + b[tid]

def execute_sum_on_gpu_via_CU(a, b):
    assert a.shape == b.shape
    cu = CU(target='gpu')
    result = np.zeros_like(a)
    d_result = cu.output(result)
    cu.enqueue(sum, ntid=result.size, args=(a, b, result))
    cu.wait()
    cu.close()
    return result

User Guide

Major features of NumbaPro include support for (parallel) NumPy ufuncs and gufuncs, CUDA support for GPU execution and a multi-threaded parallel range.

Additional examples: GitHub repo of NumbaPro examples

Requirements

  • python 2.6 or 2.7 (support is not yet available for 3.x)
  • LLVM (>= 3.2)
  • nVidia CUDA and NVVM libraries (>= 5.0)

Python modules:

  • llvmpy (>= 0.11.0)
  • bitarray (>= 0.8.1)

License Agreement